PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462926290
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 114aa    MW: 12323.6 Da    PI: 9.5191
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462926290genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.63.6e-16411081785
                E--HHH.HTT---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
         B3  17 vlpkkfaeehggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                +lp +f+e++g+++++   ++l++  +s   W+v++ +  ks++++ ++GWk F+kan++++gD+++F  +
  462926290  41 SLPLTFCEAIGLQEACM--IILKTsiSSTIAWQVRV-VPYKSCAHMRQSGWKAFCKANKINVGDVCIFNAV 108
                79***********9995..555553367799*****.6888899************************954 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.4E-1440111IPR015300DNA-binding pseudobarrel domain
CDDcd100177.76E-1141105No hitNo description
SuperFamilySSF1019367.65E-1341110IPR015300DNA-binding pseudobarrel domain
PfamPF023624.0E-1341109IPR003340B3 DNA binding domain
PROSITE profilePS508639.91142114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MAFGSCYLGL RPPSSTSFLC ALRGGGLPSR ATVVRIAVAA SLPLTFCEAI GLQEACMIIL  60
KTSISSTIAW QVRVVPYKSC AHMRQSGWKA FCKANKINVG DVCIFNAVET KLWH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975298.14e-25PREDICTED: putative B3 domain-containing protein Os04g0347400 isoform X1
RefseqXP_004975299.14e-25PREDICTED: putative B3 domain-containing protein Os04g0347400 isoform X2
TrEMBLA0A0A9VPG18e-30A0A0A9VPG1_ARUDO; Uncharacterized protein
STRINGSi010026m6e-25(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187